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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
161
Transcription
152
DNA binding
11
DNA methylation
6
3D chromatin structure
Target of assay
123
histone
123
histone modification
65
narrow histone mark
58
broad histone mark
32
control
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
57
August, 2017
51
June, 2019
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
20
May, 2021
12
February, 2023
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
419
bam
378
bigWig
235
fastq
171
bed narrowPeak
168
tsv
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
514
Homo sapiens
Biosample type
2402
tissue
551
cell line
514
primary cell
334
in vitro differentiated cells
8
stem cell
Organ
249
epithelium
194
pancreas
37
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
514
AMP
Genome assembly (visualization)
400
hg19
336
GRCh38
Lab
514
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
514 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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