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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
221
ChIP-seq
197
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
283
DNA accessibility
221
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
196
histone
196
histone modification
104
broad histone mark
92
narrow histone mark
21
control
7
RNA binding protein
7
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
563
bigWig
546
bam
351
fastq
270
tsv
258
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
86
bigBed narrowPeak
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1024
Homo sapiens
Biosample type
2338
tissue
1024
primary cell
662
cell line
326
in vitro differentiated cells
10
stem cell
Organ
372
epithelium
305
pancreas
39
connective tissue
37
vasculature
31
blood vessel
31
kidney
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
495
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
577
hg19
490
GRCh38
Lab
460
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
month_released!
August, 2017
May, 2019
BIOSAMPLE
ASSAY
1024 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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