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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
193
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
250
DNA accessibility
249
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
57
August, 2017
36
February, 2021
31
June, 2019
30
October, 2019
28
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
480
bam
477
bigWig
273
fastq
266
bed narrowPeak
170
tsv
101
zippedFastqFolder
100
tagAlign
80
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
863
Homo sapiens
Biosample type
2425
tissue
863
primary cell
660
cell line
391
in vitro differentiated cells
10
stem cell
Organ
311
epithelium
265
pancreas
31
vasculature
29
connective tissue
27
blood vessel
24
kidney
20
vein
13
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
426
AMP
232
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
506
hg19
402
GRCh38
Lab
391
AMP-T2D consortium
239
Kyle Gaulton, UCSD
232
Klaus Kaestner, Upenn
1
ITG
Audit category:
44
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
assay_title!
single cell RNA-seq
DNase-seq
BIOSAMPLE
ASSAY
863 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
30
31
1
pancreatic beta cell
13
21
21
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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