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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
193
ATAC-seq
single cell RNA-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
273
DNA accessibility
195
DNA binding
153
Transcription
58
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
55
June, 2019
55
May, 2021
36
February, 2021
34
October, 2019
28
July, 2019
19
September, 2020
9
November, 2017
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
329
bam
326
bigWig
274
fastq
211
bed narrowPeak
109
bigBed narrowPeak
101
zippedFastqFolder
74
tsv
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
690
Homo sapiens
Biosample type
2572
tissue
690
primary cell
653
cell line
392
in vitro differentiated cells
10
stem cell
Organ
329
epithelium
265
pancreas
37
vasculature
36
kidney
34
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
457
AMP
232
HPAP
T1D
1
ITG
Genome assembly (visualization)
348
hg19
249
GRCh38
Lab
422
AMP-T2D consortium
232
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
assay_title!
single cell RNA-seq
award.project!
T1D
BIOSAMPLE
ASSAY
690 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
13
30
52
31
1
pancreatic beta cell
13
21
21
16
1
Langerhans cell
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
2
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