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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
241
total RNA-seq
193
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
269
DNA accessibility
264
DNA binding
243
Transcription
55
DNA methylation
10
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
29
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
101
May, 2022
88
February, 2023
72
September, 2018
59
August, 2017
42
June, 2019
36
February, 2021
23
October, 2019
21
July, 2019
19
September, 2020
9
November, 2017
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
478
bam
478
bigWig
274
fastq
273
bed narrowPeak
164
tsv
101
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
858
Homo sapiens
Biosample type
2368
tissue
858
primary cell
643
cell line
392
in vitro differentiated cells
10
stem cell
Organ
329
epithelium
265
pancreas
37
vasculature
kidney
35
connective tissue
31
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
421
AMP
232
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
503
hg19
401
GRCh38
Lab
386
AMP-T2D consortium
239
Kyle Gaulton, UCSD
232
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
assay_title!
single cell RNA-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
858 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
30
31
1
pancreatic beta cell
13
21
21
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
4
2
1
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