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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
56
snATAC-seq
47
WGBS
42
ATAC-seq
16
pCHi-C
4
Hi-C
Assay category
273
Transcription
98
DNA accessibility
84
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
August, 2020
3
October, 2022
1
March, 2023
Available data
183
bigWig
180
bam
162
fastq
153
zippedFastqFolder
102
tsv
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
522
Homo sapiens
Biosample type
522
primary cell
97
tissue
11
cell line
2
stem cell
Organ
145
epithelium
145
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
317
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
184
GRCh38
183
hg19
Lab
317
Klaus Kaestner, Upenn
204
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
month_released!
August, 2020
award.project!
AMP
BIOSAMPLE
ASSAY
522 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
ATAC-seq
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
31
24
1
pancreatic beta cell
11
16
14
1
exocrine cell
39
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