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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
92
ChIP-seq
70
single cell RNA-seq
65
ATAC-seq
47
WGBS
18
DNase-seq
6
RRBS
5
Hi-C
1
FAIRE-seq
Assay category
163
Transcription
92
DNA binding
84
DNA accessibility
53
DNA methylation
5
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
11
July, 2019
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
242
bam
231
fastq
224
bigWig
116
tsv
106
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
hdf5
1
tar
Organism
397
Homo sapiens
Biosample type
397
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
397
epithelium
339
pancreas
38
connective tissue
36
kidney
35
vasculature
29
blood vessel
22
vein
18
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
252
AMP
145
HPAP
Genome assembly (visualization)
225
hg19
218
GRCh38
Lab
252
AMP-T2D consortium
145
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
August, 2020
files.file_type!
hdf5
BIOSAMPLE
ASSAY
397 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
12
30
31
1
pancreatic beta cell
21
13
12
21
16
1
pancreatic acinar cell
4
8
12
9
1
pancreatic ductal cell
4
13
10
4
endothelial cell of umbilical vein
17
2
2
1
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