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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
7
total RNA-seq
4
DNase-seq
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
7
DNA accessibility
7
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
36
bam
28
bigWig
21
bed narrowPeak
13
bigBed narrowPeak
7
tsv
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
39
Homo sapiens
Biosample type
245
tissue
39
primary cell
30
cell line
10
in vitro differentiated cells
Organ
38
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
6
liver
Project
39
AMP
Genome assembly (visualization)
31
hg19
27
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
month_released!
August, 2020
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
hepatocyte
5
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
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