Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ATAC-seq
49
total RNA-seq
24
ChIP-seq
4
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
107
DNA accessibility
49
Transcription
24
DNA binding
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
121
bam
113
bigWig
47
tsv
21
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
181
Homo sapiens
Biosample type
435
tissue
181
primary cell
31
cell line
8
in vitro differentiated cells
Organ
33
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
1
liver
Project
136
AMP
45
T1D
Genome assembly (visualization)
116
hg19
67
GRCh38
Lab
136
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
1
audit script error
month_released!
August, 2020
BIOSAMPLE
ASSAY
181 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
FAIRE-seq
Hi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
endothelial cell of umbilical vein
17
2
1
1
macrophage
11
epithelial cell of proximal tubule
7
+ See 30 more…
See all biosamples
Download