Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
72
ChIP-seq
70
single cell RNA-seq
65
ATAC-seq
47
WGBS
14
DNase-seq
6
RRBS
3
Hi-C
Assay category
162
Transcription
79
DNA accessibility
72
DNA binding
53
DNA methylation
3
3D chromatin structure
Target of assay
50
histone
50
histone modification
28
narrow histone mark
22
broad histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
29
August, 2017
19
September, 2020
18
June, 2019
12
October, 2019
10
July, 2019
August, 2020
6
February, 2021
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
June, 2018
Available data
228
fastq
216
bam
201
bigWig
115
tsv
89
bed narrowPeak
80
zippedFastqFolder
44
bigBed narrowPeak
15
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
369
Homo sapiens
Biosample type
369
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
399
epithelium
339
pancreas
39
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
224
AMP
145
HPAP
Genome assembly (visualization)
203
hg19
201
GRCh38
Lab
224
AMP-T2D consortium
145
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
3
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
August, 2020
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
369 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
primary cell
pancreatic alpha cell
52
13
12
30
31
1
pancreatic beta cell
21
13
12
21
16
1
pancreatic acinar cell
4
8
12
9
1
pancreatic ductal cell
4
13
10
4
epithelial cell of proximal tubule
1
10
1
1
+ See 14 more…
See all biosamples
Download