Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
245
total RNA-seq
193
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
276
DNA accessibility
250
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
49
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
27
July, 2019
13
October, 2019
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
4
November, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
573
bam
573
bigWig
395
fastq
269
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
83
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1041
Homo sapiens
Biosample type
2619
tissue
1041
primary cell
531
cell line
383
in vitro differentiated cells
10
stem cell
Organ
394
epithelium
339
pancreas
38
connective tissue
35
vasculature
34
kidney
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
317
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
594
hg19
503
GRCh38
Lab
484
AMP-T2D consortium
317
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
organ_slims!
blood vessel
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
1041 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
30
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
21
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 88 more…
See all biosamples
Download