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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
18
DNase-seq
Assay category
21
DNA binding
18
DNA accessibility
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
14
August, 2017
14
June, 2019
6
November, 2017
4
October, 2019
1
November, 2020
Available data
578
bam
578
bigWig
402
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
39
Homo sapiens
Biosample type
145
tissue
59
cell line
39
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
39
AMP
Genome assembly (visualization)
38
hg19
35
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
August, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
DNase-seq
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
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