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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
241
total RNA-seq
193
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
9
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
269
DNA accessibility
264
DNA binding
55
DNA methylation
9
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
42
June, 2019
24
July, 2019
23
October, 2019
9
November, 2017
8
January, 2021
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
March, 2023
1
November, 2018
Available data
578
bam
578
bigWig
402
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1044
Homo sapiens
Biosample type
2478
tissue
1044
primary cell
641
cell line
394
in vitro differentiated cells
8
stem cell
Organ
399
epithelium
339
pancreas
39
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
523
AMP
317
HPAP
204
T1D
Genome assembly (visualization)
603
hg19
500
GRCh38
Lab
488
AMP-T2D consortium
317
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
August, 2020
March, 2023
organ_slims!
kidney
BIOSAMPLE
ASSAY
1044 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
30
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
21
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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