Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
75
single cell RNA-seq
41
WGBS
32
ChIP-seq
29
snATAC-seq
16
pCHi-C
9
DNase-seq
1
DNAme array
1
Hi-C
Assay category
170
Transcription
154
DNA accessibility
42
DNA methylation
32
DNA binding
1
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
February, 2021
22
May, 2021
15
June, 2019
12
August, 2017
8
January, 2021
8
October, 2019
7
August, 2020
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
1
September, 2018
Available data
153
zippedFastqFolder
138
fastq
35
bam
17
bigWig
12
tsv
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
1
hic
1
tagAlign
Organism
415
Homo sapiens
Biosample type
889
tissue
415
primary cell
129
cell line
97
in vitro differentiated cells
7
stem cell
Organ
173
epithelium
155
pancreas
11
kidney
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
5
connective tissue
5
vein
3
heart
2
musculature of body
1
bone element
1
bone marrow
1
eye
1
liver
Project
276
HPAP
114
AMP
24
T1D
1
ITG
Genome assembly (visualization)
hg19
534
GRCh38
Lab
276
Klaus Kaestner, Upenn
114
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
12
inconsistent ontology term
month_released!
February, 2021
assembly!
hg19
BIOSAMPLE
ASSAY
415 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
snATAC-seq
pCHi-C
DNase-seq
DNAme array
Hi-C
primary cell
pancreatic alpha cell
29
42
25
6
Langerhans cell
73
21
pancreatic beta cell
16
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
+ See 37 more…
See all biosamples
Download