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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
75
single cell RNA-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
185
DNA accessibility
172
Transcription
DNA binding
52
DNA methylation
9
3D chromatin structure
Date released
134
May, 2022
102
May, 2020
88
February, 2023
56
September, 2020
February, 2021
20
May, 2021
13
July, 2019
8
January, 2021
4
October, 2019
3
August, 2017
3
October, 2022
1
March, 2020
1
November, 2018
1
September, 2018
Available data
153
zippedFastqFolder
118
fastq
54
bigWig
48
bam
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
bed bed3+
5
hic
4
bedpe bed3+
4
hdf5
3
bed narrowPeak
3
bigBed narrowPeak
3
cool
2
csv
1
bed broadPeak
1
bigBed broadPeak
1
tar
Organism
434
Homo sapiens
Biosample type
508
tissue
434
primary cell
59
cell line
47
in vitro differentiated cells
7
stem cell
Organ
149
epithelium
136
pancreas
8
blood
8
bodily fluid
6
vasculature
5
blood vessel
5
kidney
4
brain
3
connective tissue
3
vein
2
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
269
HPAP
141
AMP
24
T1D
Genome assembly (visualization)
378
hg19
GRCh38
Lab
269
Klaus Kaestner, Upenn
139
AMP-T2D consortium
26
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
4
audit script error
month_released!
February, 2021
assembly!
GRCh38
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
434 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
73
21
pancreatic alpha cell
22
42
25
1
pancreatic beta cell
13
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
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