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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
75
single cell RNA-seq
72
ChIP-seq
41
WGBS
29
snATAC-seq
16
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
FAIRE-seq
Assay category
184
DNA accessibility
172
Transcription
72
DNA binding
52
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
57
May, 2021
56
September, 2020
February, 2021
17
August, 2017
13
July, 2019
11
October, 2019
8
January, 2021
8
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
153
zippedFastqFolder
135
fastq
93
bigWig
82
bam
33
bed narrowPeak
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
hdf5
3
bigBed narrowPeak
3
cool
2
csv
2
tagAlign
Organism
505
Homo sapiens
Biosample type
821
tissue
505
primary cell
194
cell line
125
in vitro differentiated cells
7
stem cell
Organ
174
epithelium
148
pancreas
14
vasculature
12
blood vessel
9
vein
8
blood
8
bodily fluid
8
kidney
7
brain
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
269
HPAP
212
AMP
24
T1D
Genome assembly (visualization)
624
hg19
GRCh38
Lab
269
Klaus Kaestner, Upenn
177
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
4
audit script error
month_released!
February, 2021
assembly!
GRCh38
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
505 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
22
42
6
25
1
Langerhans cell
73
21
pancreatic beta cell
13
11
6
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
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