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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
100
single cell RNA-seq
83
ATAC-seq
53
total RNA-seq
29
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
158
DNA binding
155
Transcription
113
DNA accessibility
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
72
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
45
May, 2020
43
April, 2018
31
October, 2019
18
July, 2019
14
May, 2021
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
February, 2021
3
June, 2018
2
October, 2018
Available data
431
bigWig
426
bam
364
fastq
210
bed narrowPeak
167
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
426
Homo sapiens
Biosample type
1453
tissue
483
cell line
426
primary cell
269
in vitro differentiated cells
3
stem cell
Organ
242
epithelium
194
pancreas
33
connective tissue
32
vasculature
31
kidney
27
blood vessel
20
vein
17
brain
13
musculature of body
12
heart
12
liver
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
426
AMP
T1D
Genome assembly (visualization)
391
hg19
343
GRCh38
Lab
426
AMP-T2D consortium
Audit category:
41
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2021
award.project!
T1D
BIOSAMPLE
ASSAY
426 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
pancreatic beta cell
13
12
7
10
pancreatic alpha cell
13
12
6
10
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
5
4
pancreatic endocrine cell
23
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