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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
single cell RNA-seq
41
WGBS
32
ChIP-seq
29
snATAC-seq
16
pCHi-C
10
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
Assay category
153
DNA accessibility
95
Transcription
52
DNA methylation
32
DNA binding
6
3D chromatin structure
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
101
May, 2022
88
February, 2023
57
May, 2020
35
May, 2021
February, 2021
16
September, 2020
13
August, 2017
11
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2020
Available data
bigWig
506
bam
294
bed narrowPeak
248
fastq
163
tsv
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
tar
Organism
354
Homo sapiens
Biosample type
736
tissue
354
primary cell
129
in vitro differentiated cells
127
cell line
7
stem cell
Organ
169
epithelium
148
pancreas
8
blood
8
bodily fluid
8
kidney
8
vasculature
7
blood vessel
7
vein
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
196
HPAP
133
AMP
24
T1D
1
ITG
Genome assembly (visualization)
31
hg19
17
GRCh38
Lab
196
Klaus Kaestner, Upenn
133
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
16
inconsistent ontology term
4
audit script error
month_released!
February, 2021
files.file_type!
bigWig
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
354 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
22
42
25
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
CD4-positive, alpha-beta memory T cell
22
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