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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
116
single cell RNA-seq
94
ChIP-seq
ATAC-seq
1
DNase-seq
1
RRBS
Assay category
236
Transcription
94
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
59
September, 2018
55
August, 2017
48
July, 2018
February, 2021
38
April, 2018
38
September, 2020
9
November, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
534
bigWig
523
bam
332
fastq
256
bed narrowPeak
251
tsv
114
zippedFastqFolder
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
332
Homo sapiens
Biosample type
427
cell line
348
tissue
332
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
220
pancreas
200
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
218
AMP
114
HPAP
Genome assembly (visualization)
204
hg19
197
GRCh38
Lab
218
AMP-T2D consortium
114
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2021
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
332 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
52
12
13
pancreatic beta cell
21
12
13
exocrine cell
39
pancreatic ductal cell
4
9
13
pancreatic endocrine cell
23
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