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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
ChIP-seq
217
total RNA-seq
122
single cell RNA-seq
61
ATAC-seq
11
DNase-seq
10
WGBS
4
RRBS
2
FAIRE-seq
Assay category
339
Transcription
314
DNA binding
74
DNA accessibility
14
DNA methylation
Target of assay
147
histone modification
146
histone
84
transcription factor
83
control
78
broad histone mark
68
narrow histone mark
20
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
233
August, 2017
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
48
December, 2017
February, 2021
44
April, 2018
41
September, 2020
27
November, 2018
24
May, 2022
17
October, 2017
11
September, 2017
9
November, 2017
7
August, 2020
7
December, 2018
7
January, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
2061
bam
1939
bigWig
1270
bed narrowPeak
887
tsv
741
fastq
670
bigBed narrowPeak
338
tagAlign
262
bed broadPeak
241
bed bed3+
225
bigBed broadPeak
153
zippedFastqFolder
68
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
5
bed bed3
4
hdf5
3
cool
2
csv
1
bedpe
1
tagAlign bed3+
1
tar
Organism
734
Homo sapiens
Biosample type
427
cell line
377
tissue
364
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
465
pancreas
232
epithelium
83
liver
46
connective tissue
43
adipose tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
617
AMP
124
HPAP
Genome assembly (visualization)
520
hg19
509
GRCh38
Lab
591
AMP-T2D consortium
124
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2021
BIOSAMPLE
ASSAY
741 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
6
20
1
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 8 more…
primary cell
pancreatic alpha cell
13
52
12
13
pancreatic beta cell
13
21
12
10
exocrine cell
39
pancreatic ductal cell
13
4
9
4
pancreatic acinar cell
8
4
9
5
+ See 18 more…
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