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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
total RNA-seq
226
ChIP-seq
196
ATAC-seq
175
single cell RNA-seq
41
WGBS
29
DNase-seq
29
snATAC-seq
16
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
423
Transcription
255
DNA accessibility
226
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
199
histone
199
histone modification
106
broad histone mark
93
narrow histone mark
22
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
565
bigWig
548
bam
306
fastq
263
tsv
261
bed narrowPeak
153
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
36
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
981
Homo sapiens
Biosample type
1908
tissue
981
primary cell
566
cell line
300
in vitro differentiated cells
10
stem cell
Organ
371
epithelium
299
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
497
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
578
hg19
492
GRCh38
Lab
462
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
4
audit script error
Audit category:
32
missing controlled_by
month_released!
February, 2021
August, 2017
BIOSAMPLE
ASSAY
981 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
34
12
25
1
Langerhans cell
73
21
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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