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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
233
total RNA-seq
199
ATAC-seq
172
single cell RNA-seq
41
WGBS
31
DNase-seq
29
snATAC-seq
16
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
405
Transcription
279
DNA binding
260
DNA accessibility
43
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
589
bigWig
588
bam
364
fastq
294
bed narrowPeak
245
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
32
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
1009
Homo sapiens
Biosample type
2155
tissue
1009
primary cell
566
cell line
368
in vitro differentiated cells
10
stem cell
Organ
387
epithelium
340
pancreas
32
vasculature
29
kidney
28
connective tissue
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
525
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
594
hg19
516
GRCh38
Lab
490
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2021
July, 2019
BIOSAMPLE
ASSAY
1009 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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