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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
4
Hi-C
3
ChIP-seq
2
total RNA-seq
Assay category
27
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
24
June, 2019
4
July, 2019
3
August, 2021
2
May, 2021
2
October, 2019
February, 2021
1
November, 2020
Available data
563
bigWig
558
bam
316
fastq
294
bed narrowPeak
215
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
36
Homo sapiens
Biosample type
205
tissue
36
primary cell
25
in vitro differentiated cells
3
stem cell
2
cell line
Organ
21
epithelium
10
kidney
8
brain
8
vasculature
7
connective tissue
6
blood vessel
6
liver
3
heart
2
vein
1
eye
1
musculature of body
Project
36
AMP
Genome assembly (visualization)
30
GRCh38
29
hg19
Lab
34
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
month_released!
February, 2021
July, 2018
BIOSAMPLE
ASSAY
36 results
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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
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