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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
244
total RNA-seq
199
ATAC-seq
175
single cell RNA-seq
41
WGBS
29
snATAC-seq
25
DNase-seq
16
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
421
Transcription
256
DNA binding
253
DNA accessibility
51
DNA methylation
6
3D chromatin structure
Target of assay
220
histone
220
histone modification
113
broad histone mark
107
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
51
June, 2019
February, 2021
48
July, 2018
43
April, 2018
26
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
582
bigWig
574
bam
358
fastq
273
bed narrowPeak
261
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
28
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
Organism
1003
Homo sapiens
Biosample type
2059
tissue
1003
primary cell
566
cell line
368
in vitro differentiated cells
10
stem cell
Organ
400
epithelium
340
pancreas
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
594
hg19
512
GRCh38
Lab
484
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2021
organ_slims!
vasculature
BIOSAMPLE
ASSAY
1003 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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