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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
DNase-seq
4
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
Assay category
24
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
21
June, 2019
4
July, 2019
3
August, 2021
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
575
bigWig
564
bam
326
fastq
270
bed narrowPeak
247
tsv
153
zippedFastqFolder
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
34
Homo sapiens
Biosample type
204
tissue
34
primary cell
21
in vitro differentiated cells
3
cell line
3
stem cell
Organ
20
epithelium
9
kidney
8
brain
7
connective tissue
7
vasculature
6
blood vessel
6
liver
2
heart
2
vein
1
eye
1
musculature of body
Project
34
AMP
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
32
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
month_released!
February, 2023
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
34 results
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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
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