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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
197
Transcription
97
DNA accessibility
84
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
134
May, 2022
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
7
August, 2020
3
October, 2022
1
March, 2023
Available data
190
bigWig
180
bam
153
zippedFastqFolder
102
tsv
93
fastq
84
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
445
Homo sapiens
Biosample type
445
primary cell
79
tissue
6
cell line
2
stem cell
Organ
115
epithelium
115
pancreas
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
248
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
191
GRCh38
183
hg19
Lab
248
Klaus Kaestner, Upenn
196
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
month_released!
February, 2023
organ_slims!
blood
award.project!
AMP
BIOSAMPLE
ASSAY
445 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
15
29
31
1
pancreatic beta cell
1
16
16
1
pancreatic acinar cell
4
1
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