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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ATAC-seq
87
single cell RNA-seq
48
snATAC-seq
47
WGBS
37
ChIP-seq
21
total RNA-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
154
DNA accessibility
108
Transcription
58
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
February, 2023
59
September, 2020
57
May, 2020
57
May, 2021
45
February, 2021
13
July, 2019
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
613
bigWig
bam
333
fastq
295
bed narrowPeak
258
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
383
Homo sapiens
Biosample type
775
tissue
383
primary cell
87
in vitro differentiated cells
73
cell line
7
stem cell
Organ
127
epithelium
115
pancreas
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
248
HPAP
118
AMP
16
T1D
1
ITG
Genome assembly (visualization)
54
hg19
11
GRCh38
Lab
248
Klaus Kaestner, Upenn
83
AMP-T2D consortium
51
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
3
inconsistent ontology term
month_released!
February, 2023
organ_slims!
blood
files.file_type!
bam
BIOSAMPLE
ASSAY
383 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
15
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic beta cell
16
16
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
1
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