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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
total RNA-seq
187
single cell RNA-seq
100
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
389
Transcription
DNA binding
188
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
315
fastq
277
bam
276
bigWig
225
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
34
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
662
Homo sapiens
Biosample type
1727
tissue
662
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
314
epithelium
276
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
324
HPAP
262
AMP
75
T1D
1
ITG
Genome assembly (visualization)
291
hg19
284
GRCh38
Lab
324
Klaus Kaestner, Upenn
260
AMP-T2D consortium
77
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
21
inconsistent ontology term
month_released!
May, 2020
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
662 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
35
31
1
pancreatic beta cell
21
12
23
16
1
monocyte
52
13
1
1
exocrine cell
39
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