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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
107
total RNA-seq
100
single cell RNA-seq
39
ATAC-seq
22
DNase-seq
10
RRBS
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
247
DNA binding
209
Transcription
62
DNA accessibility
10
DNA methylation
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
40
June, 2019
27
July, 2019
25
October, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
2
October, 2018
Available data
502
bigWig
484
bam
288
bed narrowPeak
226
fastq
207
tsv
102
bigBed narrowPeak
99
tagAlign
42
bed broadPeak
42
bigBed broadPeak
26
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
1
bed bed3
1
tar
Organism
529
Homo sapiens
Biosample type
1574
tissue
529
primary cell
527
cell line
293
in vitro differentiated cells
3
stem cell
Organ
220
epithelium
182
pancreas
33
connective tissue
27
vasculature
25
kidney
21
blood vessel
18
brain
15
vein
12
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
394
AMP
135
T1D
Genome assembly (visualization)
529
hg19
490
GRCh38
Lab
359
AMP-T2D consortium
170
Kyle Gaulton, UCSD
Audit category:
34
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2020
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
529 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
51
13
pancreatic beta cell
7
10
12
7
CD8-positive, alpha-beta T cell
33
2
pancreatic alpha cell
7
10
12
6
pancreatic ductal cell
13
4
10
4
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