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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
105
total RNA-seq
100
single cell RNA-seq
39
ATAC-seq
19
DNase-seq
10
RRBS
5
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
232
DNA binding
207
Transcription
58
DNA accessibility
10
DNA methylation
5
3D chromatin structure
Target of assay
217
histone
217
histone modification
111
broad histone mark
106
narrow histone mark
9
RNA binding protein
9
control
9
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
39
June, 2019
27
July, 2019
10
October, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
Available data
483
bigWig
463
bam
272
bed narrowPeak
223
fastq
205
tsv
99
tagAlign
86
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
25
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
2
hdf5
1
bed bed3
Organism
513
Homo sapiens
Biosample type
1515
tissue
513
primary cell
466
cell line
297
in vitro differentiated cells
3
stem cell
Organ
227
epithelium
185
pancreas
34
connective tissue
31
vasculature
blood vessel
25
kidney
21
brain
17
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
375
AMP
135
T1D
3
HPAP
Genome assembly (visualization)
513
hg19
473
GRCh38
Lab
340
AMP-T2D consortium
170
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
34
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2020
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
513 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
84
51
13
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
CD8-positive, alpha-beta T cell
33
2
pancreatic ductal cell
13
4
10
4
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