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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
274
ChIP-seq
196
total RNA-seq
187
single cell RNA-seq
100
ATAC-seq
47
WGBS
29
snATAC-seq
28
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
385
Transcription
274
DNA binding
158
DNA accessibility
57
DNA methylation
6
3D chromatin structure
Target of assay
235
histone
235
histone modification
122
broad histone mark
113
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
July, 2018
47
June, 2019
43
April, 2018
33
October, 2019
26
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
513
bigWig
507
bam
382
fastq
289
bed narrowPeak
221
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
897
Homo sapiens
Biosample type
2262
tissue
897
primary cell
595
cell line
391
in vitro differentiated cells
10
stem cell
Organ
402
epithelium
343
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
443
AMP
294
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
524
hg19
481
GRCh38
Lab
408
AMP-T2D consortium
294
Klaus Kaestner, Upenn
194
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2020
audit.ERROR.category!
audit script error
organ_slims!
heart
BIOSAMPLE
ASSAY
897 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
pancreatic alpha cell
13
52
12
35
31
Langerhans cell
85
21
pancreatic beta cell
13
21
12
23
16
exocrine cell
39
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