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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
119
total RNA-seq
113
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
29
ATAC-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
234
Transcription
209
DNA binding
117
DNA accessibility
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
31
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
331
bigWig
325
bam
227
bed narrowPeak
151
fastq
117
tsv
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
595
Homo sapiens
Biosample type
2039
tissue
595
primary cell
569
cell line
391
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
263
AMP
172
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
353
hg19
299
GRCh38
Lab
228
AMP-T2D consortium
194
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
May, 2020
organ_slims!
pancreas
BIOSAMPLE
ASSAY
595 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
DNase-seq
ATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
52
13
1
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
2
1
endothelial cell of umbilical vein
17
2
2
1
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