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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
72
ATAC-seq
72
ChIP-seq
70
single cell RNA-seq
47
WGBS
14
DNase-seq
6
RRBS
3
Hi-C
Assay category
162
Transcription
86
DNA accessibility
72
DNA binding
53
DNA methylation
3
3D chromatin structure
Target of assay
50
histone
50
histone modification
28
narrow histone mark
22
broad histone mark
18
control
4
RNA binding protein
4
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
29
August, 2017
19
September, 2020
18
June, 2019
12
October, 2019
10
July, 2019
7
August, 2020
6
February, 2021
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
June, 2018
Available data
235
fastq
216
bam
208
bigWig
115
tsv
89
bed narrowPeak
80
zippedFastqFolder
44
bigBed narrowPeak
15
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
376
Homo sapiens
Biosample type
376
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
224
AMP
152
HPAP
Genome assembly (visualization)
208
GRCh38
203
hg19
Lab
224
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
3
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
May, 2020
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
376 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
RRBS
Hi-C
primary cell
pancreatic alpha cell
52
35
13
12
31
1
pancreatic beta cell
21
23
13
12
16
1
pancreatic acinar cell
4
9
8
12
1
pancreatic ductal cell
4
4
13
10
epithelial cell of proximal tubule
1
10
1
1
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