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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
146
total RNA-seq
93
single cell RNA-seq
78
ATAC-seq
26
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
241
Transcription
217
DNA binding
105
DNA accessibility
Target of assay
186
histone
186
histone modification
94
narrow histone mark
92
broad histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
149
May, 2021
82
May, 2020
72
September, 2018
58
August, 2017
43
April, 2018
42
July, 2018
30
June, 2019
29
October, 2019
18
July, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
2
June, 2018
2
May, 2019
2
October, 2018
Available data
575
bigWig
564
bam
402
fastq
270
bed narrowPeak
253
tsv
100
tagAlign
86
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
19
zippedFastqFolder
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
564
Homo sapiens
Biosample type
1879
tissue
564
primary cell
520
cell line
190
in vitro differentiated cells
3
stem cell
Organ
233
epithelium
189
pancreas
31
vasculature
27
blood vessel
24
connective tissue
24
kidney
20
vein
17
brain
11
liver
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
388
AMP
176
T1D
Genome assembly (visualization)
534
hg19
489
GRCh38
Lab
388
AMP-T2D consortium
176
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2022
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
564 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
pancreatic beta cell
13
10
12
7
pancreatic alpha cell
13
10
12
6
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
11
5
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