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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
243
total RNA-seq
160
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
30
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
399
Transcription
279
DNA binding
226
DNA accessibility
17
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
608
bigWig
603
bam
409
fastq
293
bed narrowPeak
266
tsv
108
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
944
Homo sapiens
Biosample type
2697
tissue
944
primary cell
654
cell line
387
in vitro differentiated cells
10
stem cell
Organ
322
epithelium
263
pancreas
36
kidney
36
vasculature
33
connective tissue
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
552
AMP
204
T1D
187
HPAP
1
ITG
Genome assembly (visualization)
618
hg19
530
GRCh38
Lab
517
AMP-T2D consortium
239
Kyle Gaulton, UCSD
187
Klaus Kaestner, Upenn
1
ITG
Audit category:
54
inconsistent ontology term
28
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2022
November, 2020
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
944 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
6
Langerhans cell
52
27
pancreatic beta cell
13
21
10
12
CD8-positive, alpha-beta T cell
33
4
2
1
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