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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
247
total RNA-seq
187
single cell RNA-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
270
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
234
histone
234
histone modification
122
broad histone mark
112
narrow histone mark
32
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
31
June, 2019
27
October, 2019
20
February, 2021
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
496
bigWig
486
bam
340
fastq
258
tsv
220
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
51
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
791
Homo sapiens
Biosample type
2185
tissue
791
primary cell
351
in vitro differentiated cells
316
cell line
10
stem cell
Organ
309
epithelium
275
pancreas
31
connective tissue
24
kidney
24
vasculature
23
blood vessel
19
vein
13
musculature of body
11
liver
10
heart
7
brain
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
367
AMP
227
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
512
hg19
454
GRCh38
Lab
332
AMP-T2D consortium
231
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
791 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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