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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
238
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
227
histone
227
histone modification
118
broad histone mark
109
narrow histone mark
7
RNA binding protein
7
control
7
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
23
October, 2019
22
July, 2019
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
604
bigWig
600
bam
400
fastq
289
bed narrowPeak
270
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
43
bed broadPeak
43
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
604
Homo sapiens
Biosample type
1675
tissue
604
primary cell
259
in vitro differentiated cells
254
cell line
3
stem cell
Organ
225
epithelium
192
pancreas
32
connective tissue
28
kidney
23
vasculature
21
blood vessel
15
vein
11
brain
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
414
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
587
hg19
513
GRCh38
Lab
379
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
BIOSAMPLE
ASSAY
604 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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