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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
27
DNase-seq
22
ATAC-seq
Assay category
49
DNA accessibility
47
DNA binding
Target of assay
37
histone
37
histone modification
21
narrow histone mark
16
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
19
August, 2017
14
September, 2018
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
590
bigWig
578
bam
409
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
96
Homo sapiens
Biosample type
514
tissue
347
cell line
96
primary cell
15
in vitro differentiated cells
Organ
48
epithelium
22
pancreas
16
kidney
15
connective tissue
11
brain
9
musculature of body
8
vasculature
6
heart
4
blood vessel
3
eye
2
liver
Project
96
AMP
Genome assembly (visualization)
93
GRCh38
89
hg19
Lab
96
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
October, 2019
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
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