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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
149
ChIP-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
281
DNA accessibility
149
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
31
July, 2019
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
486
bigWig
484
bam
369
fastq
268
tsv
178
bed narrowPeak
153
zippedFastqFolder
75
bigBed narrowPeak
53
tagAlign
37
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
948
Homo sapiens
Biosample type
2315
tissue
948
primary cell
616
cell line
331
in vitro differentiated cells
9
stem cell
Organ
347
epithelium
315
pancreas
35
connective tissue
23
kidney
18
brain
14
vasculature
11
heart
11
liver
10
musculature of body
9
blood vessel
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
459
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
498
hg19
420
GRCh38
Lab
434
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
43
inconsistent ontology term
30
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
October, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
948 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
35
12
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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