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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
159
ATAC-seq
149
ChIP-seq
135
single cell RNA-seq
35
snATAC-seq
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
Assay category
382
Transcription
221
DNA accessibility
149
DNA binding
17
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
88
February, 2023
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
40
September, 2020
37
August, 2017
31
July, 2019
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
486
bigWig
484
bam
369
fastq
268
tsv
178
bed narrowPeak
zippedFastqFolder
75
bigBed narrowPeak
53
tagAlign
37
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
795
Homo sapiens
Biosample type
2340
tissue
795
primary cell
616
cell line
331
in vitro differentiated cells
9
stem cell
Organ
267
epithelium
235
pancreas
35
connective tissue
23
kidney
18
brain
14
vasculature
11
heart
11
liver
10
musculature of body
9
blood vessel
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
459
AMP
171
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
498
hg19
420
GRCh38
Lab
434
AMP-T2D consortium
189
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
43
inconsistent ontology term
30
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
October, 2019
target.investigated_as!
narrow histone mark
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
795 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
WGBS
small RNA-seq
DNAme array
primary cell
monocyte
54
15
44
1
1
pancreatic alpha cell
52
13
9
12
1
6
Langerhans cell
33
27
pancreatic beta cell
21
10
9
12
1
exocrine cell
39
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