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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
DNase-seq
17
pCHi-C
10
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
259
DNA binding
256
DNA accessibility
58
DNA methylation
3
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
February, 2021
48
July, 2018
43
April, 2018
31
June, 2019
27
July, 2019
11
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
564
bigWig
557
bam
405
fastq
268
tsv
253
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
67
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
1027
Homo sapiens
Biosample type
2471
tissue
1027
primary cell
593
cell line
393
in vitro differentiated cells
10
stem cell
Organ
385
epithelium
343
pancreas
33
connective tissue
31
vasculature
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
501
AMP
321
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
581
hg19
495
GRCh38
Lab
466
AMP-T2D consortium
321
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2022
assay_title!
DNase-seq
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
1027 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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