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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
20
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA accessibility
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
19
October, 2019
4
July, 2019
3
November, 2017
1
March, 2020
Available data
23
bam
20
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
fastq
2
bed bed3+
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
27
Homo sapiens
Biosample type
128
tissue
66
cell line
27
primary cell
Organ
385
epithelium
343
pancreas
33
connective tissue
31
vasculature
27
blood vessel
24
kidney
20
vein
16
brain
13
musculature of body
12
liver
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
27
AMP
Genome assembly (visualization)
22
hg19
14
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
October, 2022
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
brain microvascular endothelial cell
3
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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