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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
ChIP-seq
237
total RNA-seq
198
ATAC-seq
183
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
9
RRBS
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
421
Transcription
280
DNA accessibility
265
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
34
October, 2019
23
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
579
bigWig
571
bam
404
fastq
276
bed narrowPeak
255
tsv
153
zippedFastqFolder
99
tagAlign
92
bigBed narrowPeak
42
bed broadPeak
42
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
3
hic
2
csv
1
bedpe bed3+
1
tar
Organism
1044
Homo sapiens
Biosample type
2189
tissue
1044
primary cell
660
cell line
297
in vitro differentiated cells
9
stem cell
Organ
403
epithelium
343
pancreas
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
321
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
589
hg19
502
GRCh38
Lab
484
AMP-T2D consortium
321
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
28
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2022
audit.WARNING.category!
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1044 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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