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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1186
ChIP-seq
460
ATAC-seq
209
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
42
pCHi-C
23
Hi-C
21
RRBS
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
Transcription
1186
DNA binding
758
DNA accessibility
96
DNA methylation
23
3D chromatin structure
Target of assay
865
histone modification
864
histone
439
narrow histone mark
425
broad histone mark
219
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
254
August, 2017
252
October, 2019
218
June, 2019
152
May, 2021
150
May, 2020
140
May, 2022
130
February, 2021
120
May, 2019
93
February, 2023
91
November, 2017
80
April, 2019
77
August, 2021
74
October, 2018
48
December, 2017
46
September, 2018
43
July, 2019
40
May, 2024
32
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
December, 2018
7
January, 2019
6
November, 2020
5
March, 2019
October, 2022
3
September, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
March, 2023
Available data
1341
bam
1279
bed narrowPeak
1214
bigWig
670
bigBed narrowPeak
435
fastq
338
tagAlign
262
bed broadPeak
240
bed bed3+
225
bigBed broadPeak
101
zippedFastqFolder
85
txt
64
xls
44
tsv
35
bed bedMethyl
35
bigBed bedMethyl
14
hic
11
bedpe bed3+
6
bed bed3
4
hdf5
1
bedpe
1
tagAlign bed3+
1
tar
Organism
2190
Homo sapiens
Biosample type
1550
tissue
649
primary cell
546
cell line
256
in vitro differentiated cells
8
stem cell
Organ
402
pancreas
262
brain
253
epithelium
214
kidney
213
heart
196
liver
155
vasculature
149
blood vessel
115
limb
114
connective tissue
97
bone element
89
adipose tissue
87
musculature of body
69
artery
42
eye
38
nerve
25
spleen
22
vein
18
ureter
12
skeleton
11
lung
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1912
AMP
144
HPAP
132
T1D
10
LungMap
1
ITG
Genome assembly (visualization)
1225
GRCh38
1208
hg19
Lab
1710
AMP-T2D consortium
181
Kyle Gaulton, UCSD
144
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
133
inconsistent ontology term
32
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2022
assay_slims!
Transcription
BIOSAMPLE
ASSAY
2199 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
liver
145
20
2
3
1
1
1
islet of Langerhans
71
68
1
7
4
3
1
1
4
kidney
27
75
13
6
1
1
1
bone element
84
heart left ventricle
35
2
3
4
1
1
1
+ See 158 more…
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
pancreatic beta cell
13
23
16
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
+ See 71 more…
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