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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
DNase-seq
21
ChIP-seq
Assay category
25
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
21
June, 2019
14
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
603
bigWig
597
bam
409
fastq
289
bed narrowPeak
266
tsv
153
zippedFastqFolder
103
bigBed narrowPeak
100
tagAlign
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
46
Homo sapiens
Biosample type
149
tissue
59
cell line
46
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
heart
2
liver
1
eye
1
musculature of body
Project
46
AMP
Genome assembly (visualization)
42
GRCh38
40
hg19
Lab
46
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
October, 2022
organ_slims!
heart
BIOSAMPLE
ASSAY
46 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
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