Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
10
total RNA-seq
6
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
15
Transcription
12
DNA binding
8
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
17
June, 2019
8
July, 2019
6
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
36
bam
32
bigWig
17
bed narrowPeak
15
bigBed narrowPeak
15
tsv
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
39
Homo sapiens
Biosample type
547
tissue
97
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
403
epithelium
343
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
38
AMP
1
T1D
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
38
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
month_released!
October, 2022
BIOSAMPLE
ASSAY
39 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
2
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
See all biosamples
Download