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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
4
DNase-seq
3
single cell RNA-seq
2
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
6
DNA accessibility
5
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
33
bam
26
bigWig
20
bed narrowPeak
13
bigBed narrowPeak
5
tsv
4
bed broadPeak
4
bigBed broadPeak
3
fastq
2
bed bed3+
1
hic
1
tar
Organism
36
Homo sapiens
Biosample type
36
primary cell
2
cell line
Organ
36
epithelium
21
blood vessel
21
vasculature
21
vein
11
kidney
3
pancreas
1
liver
Project
36
AMP
Genome assembly (visualization)
28
hg19
24
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
pancreatic alpha cell
2
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