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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
total RNA-seq
9
RRBS
4
ChIP-seq
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
Assay category
18
Transcription
9
DNA methylation
4
3D chromatin structure
4
DNA binding
Target of assay
4
control
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
25
bigWig
22
bam
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bed3+
4
hdf5
4
tagAlign
3
bed narrowPeak
Organism
35
Homo sapiens
Biosample type
306
tissue
44
cell line
42
in vitro differentiated cells
35
primary cell
Organ
17
epithelium
8
connective tissue
7
brain
7
kidney
6
liver
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
35
AMP
Genome assembly (visualization)
34
hg19
21
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
35 results
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total RNA-seq
RRBS
ChIP-seq
Hi-C
single cell RNA-seq
small RNA-seq
primary cell
hepatocyte
1
4
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
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