Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
total RNA-seq
9
ChIP-seq
9
RRBS
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
Assay category
18
Transcription
9
DNA binding
9
DNA methylation
4
3D chromatin structure
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
31
bigWig
27
bam
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
9
fastq
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
4
bed bed3+
4
hdf5
Organism
40
Homo sapiens
Biosample type
315
cell line
159
tissue
40
primary cell
Organ
19
epithelium
16
brain
11
vasculature
8
connective tissue
7
blood vessel
7
kidney
5
heart
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
40
AMP
Genome assembly (visualization)
40
hg19
24
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
40 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
+ See 20 more…
See all biosamples
Download