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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
56
total RNA-seq
27
snATAC-seq
17
pCHi-C
14
ATAC-seq
12
single cell RNA-seq
6
WGBS
1
DNAme array
Assay category
121
DNA binding
68
Transcription
41
DNA accessibility
7
DNA methylation
Target of assay
118
histone
118
histone modification
66
broad histone mark
52
narrow histone mark
3
control
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
173
bigWig
152
bam
128
bed narrowPeak
84
tagAlign
59
tsv
45
fastq
3
bed bed3+
1
bed bed3
Organism
254
Homo sapiens
Biosample type
585
tissue
254
primary cell
158
in vitro differentiated cells
117
cell line
Organ
6
epithelium
6
pancreas
4
connective tissue
1
bone element
1
bone marrow
Project
151
T1D
58
AMP
45
HPAP
Genome assembly (visualization)
187
hg19
151
GRCh38
Lab
186
Kyle Gaulton, UCSD
45
Klaus Kaestner, Upenn
23
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
254 results
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Clear Filters
ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
single cell RNA-seq
WGBS
DNAme array
primary cell
monocyte
85
52
1
13
1
Langerhans cell
27
12
CD8-positive, alpha-beta T cell
33
2
1
pancreatic alpha cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
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